rs30498134 SNP Detail

Summary

• ID
  rs30498134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54537650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCACA GAGATCCTCC
  TGCCTCTGCC TCCCAAATCC TGGGATTAAA GGCATGCCCC ACCACTGCCC ACCTAAAGAT
  AAAGATTCTA ATTCTATATG CATTATCAGT TTCTCACGTT CGAAAGTTTG TTAACACTGT
  TTTGGGTGAT TGAAGAATAT TTCCATCTGC ACAGAGCTCA GCTGCAATAC AGGTTTTGTG
  R
  AAATGGGTTA AGGCTATGGC TCTTCCTGAA TCAAAGCTGT ACTTTCGCAA ATGATTAGTA
  TGATCCTTGT AATTAAACAC CCAGAGGCTA TGCGATGTGT TGGTTACGGG ACCCCAGTAA
  AGCTTTTCTG GTAAATTACT AACAGCCAGA GGAGCTCTGG TGCGCATCTA CTCAAGTGCC
  CTTAAATGAA TGCAAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954924	NES10815743	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	A	A	G		G	G		G
ss320772258	CHEV_3_54434151	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30498134					SNP	A	A	G	G	A	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954924	NES10815743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54537650 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	119 bp proximal