rs30497989 SNP Detail

Summary

• ID
  rs30497989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152054353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGTTTTA AAAGCTTGAG
  TTTTTTTTTT TTTTTTTTTT TTCTTTTTCT TTTTTTGAGA CATGCTGGCC TTGAAATTGC
  TTGCGGCTCA GGATGACCTT GAATCCCTCT GGACTTGCAC CATCTCCTGT GCTGGGACTG
  TAGTGCTTAC CAACCTGCTG GTGCAAGAGT CTGTGCTGCA AGAAAATGAC GTAAAATGCT
  S
  AATGATGTCT AAGAGGGGAA ATGTGGATTA TTTGAAAAAA TAAAGAGATG AGGGGATAGT
  ATTGCCCAGA TGGGCCTGGA ACCTCACTTT TTCCTATTCT AGCCTCCTCG GTGGCTGGGC
  CCACAGTACC ACATCTGCTC CAGATCTGTT CCCTCAGTAT AGGTGCAGTT CTAAAGCTGT
  TAAAAGTCTA CATTGGGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45434302	mCV25024203	ABI	CRAMUS_MOUSE	f	SNP		G	C	C
ss136102629	ENSMUSSNP2781226	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss321028722	CHEV_3_152011680	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30497989					SNP	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152054353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1599 bp distal
Rr587535	regulatory region 587535	1055 bp distal
Rr587536	regulatory region 587536	1892 bp proximal
Tssr32407	transcription start site region 32407	142 bp downstream
Tssr32408	transcription start site region 32408	1288 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron