rs30497176 SNP Detail

Summary

• ID
  rs30497176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT CCATTCTACC AGGTCCCCAA
  W
  TAGAGCAGGA AACAGATTCT CATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45434440	mCV23027134	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss46811237	NES10724739	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		T	A	T	T	A	T	T
ss135544237	ENSMUSSNP1035648	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30497176					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811237	NES10724739	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995912 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	1203 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1317 bp distal