rs30497102 SNP Detail

Summary

• ID
  rs30497102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54479093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGTGGGG GTGGGGGTGG
  GGGTGGGGCG GGGATTCTGG GTATTTGGCT TTGGTTTGGT GGATTGTTTG GCCCTGTTGC
  TGAGGCTGCA GTTCAGTGAG AAGAAATGAA GGAAAGTCAA CTGAGCTCCT TCTCCCCTTA
  GCTTCCCTCA GAAGGCCGGC TTCTCATCAG GGGATAGGGC CCAGAGGCCA CGCAGCACCA
  R
  ACAGAAAAAG GGGAGGGCTT GTTTTATGTC ACCTCCTTTG ACTGCTGCTT TATCTTATTT
  CTGTTGGTTC CCAAGTAATG GCATCACTCA CTTTTAGGGT GCCATATCTT TTTTTTTCCT
  CCACTTTAGT CTCCACAAAG TGCCTCCCAA CCTGACACAA CTCCTACGTT CTCTCACATG
  GGAGAGTAAG ATGAAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46954402	NES10819529	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30497102					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954402	NES10819529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54479093 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	within coordinates
Rr576809	regulatory region 576809	970 bp distal
Tssr29130	transcription start site region 29130	1755 bp downstream