rs30497100 SNP Detail

Summary

• ID
  rs30497100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54478553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTCAGGT TGGGGGAGAT
  GTAAGCTTCT GCTTGTGCTG TGAGCAGCCT CAGCAAAACA GAGCTCGATG TCTTTAAGGG
  TTTTATTAAG AGACCTACAG CCTGGTTATC TACCGATTCT TAGACTTAAT ACACTGCAGA
  ATAATTCAAA CAACTTCAGA TGAGCCCCGA GGGATAGCAA CATGAAGGTC AGACTAAGTT
  Y
  TATCCCAACC AGGGTTTACC TTCCCCAACC ATATCTATTC TACCAACGAA TAGGGGTAAG
  GTTGTTTTAA TGAGATGTTC CCCATAATCT CGGGAGTTTG GATGTGTCCC CAAGTGATGG
  AGCTGTTTGG GAGGTTTAGG GGGTTGTTTC TCCCTCCTCT TCCTCTCCCT CCCCTCCCCC
  TCTTCCCTCC TAGCAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46954400	NES10819568	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30497100					SNP	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954400	NES10819568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54478553 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	within coordinates
Rr576809	regulatory region 576809	430 bp distal
Tssr29130	transcription start site region 29130	1215 bp downstream