rs30496232 SNP Detail

Summary

• ID
  rs30496232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCACAG TGGGATGTAC
  CCTTTAATAT TAATTAGAAA TCTAGAAAAT GCCCTTTAGA CAAACCCATA GGCCAATCCG
  ATCCAGGTAA CCTCAGCTAA GGTTCCCTCT TCCGGGACGA GTTTGAGTCA CGTTGACAAT
  AAAAAACAAC AATATGGAGC TTCCCTGAGA AAATGGAAAA CTTGTCTCAT ATGATTTGGT
  M
  GCTATTATGA AGCAAGTCAA ACTCTATTTC CTCTTTAATA CATGTTTTTC TTTATGTCTA
  TGACCGCTTG CCTGCCATGC ATGTCTGTGC ACCATGTACA GGCAGTGCCT GTCGAGGCCA
  GAAGAGGGCG ATAGATACCC TACCCAGTTC TCTGTAAGAG CAGCCCCTCT CCTGGCCCAA
  CCTATGTTAT TTTTGTACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46954392	NES10819593	PERLEGEN	MM_PANEL2	f	SNP	A		C		C
ss320771960	CHEV_3_54374489	CHEVERUD	SCREENING_POP	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30496232					SNP	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954392	NES10819593	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477988 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	154 bp upstream
Rr576809	regulatory region 576809	114 bp proximal
Tssr29130	transcription start site region 29130	650 bp downstream