rs30496230 SNP Detail

Summary

• ID
  rs30496230
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGTACA GCCCAGACCA
  CTTATCCAGG CAGGTGTAGC TACTCCCACA GTGGGATGTA CCCTTTAATA TTAATTAGAA
  ATCTAGAAAA TGCCCTTTAG ACAAACCCAT AGGCCAATCC GATCCAGGTA ACCTCAGCTA
  AGGTTCCCTC TTCCGGGACG AGTTTGAGTC ACGTTGACAA TAAAAAACAA CAATATGGAG
  M
  TTCCCTGAGA AAATGGAAAA CTTGTCTCAT ATGATTTGGT AGCTATTATG AAGCAAGTCA
  AACTCTATTT CCTCTTTAAT ACATGTTTTT CTTTATGTCT ATGACCGCTT GCCTGCCATG
  CATGTCTGTG CACCATGTAC AGGCAGTGCC TGTCGAGGCC AGAAGAGGGC GATAGATACC
  CTACCCAGTT CTCTGTAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954390	NES10819592	PERLEGEN	MM_PANEL2	f	SNP	C	A		A	A		A
ss320771958	CHEV_3_54374448	CHEVERUD	SCREENING_POP	f	SNP			A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30496230					SNP	C	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954390	NES10819592	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477947 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	195 bp upstream
Rr576809	regulatory region 576809	155 bp proximal
Tssr29130	transcription start site region 29130	609 bp downstream