rs30496228 SNP Detail

Summary

• ID
  rs30496228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54476251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACTGCC TCTCTCTTTT
  AGGTAGCAGG CTCCTCTAGA GACAAACTGC TGTATTTATA AACCTTCAAA ATATCTTTCT
  CTTTTTTTCT AAAATTTTCT GACATAAGTT GACCATGCCC TTACTCACCA CATGCTCTTG
  AACATGTTCT GACATCTGGA ACAAAGTATG CCCAAAGATG TGGCCTTCCT TTTTCTTTCT
  Y
  GAGCTAGGAC CTCAAAGCAG AGCGCTCAGA ATGTACTACT CAACTGAACA GCCTGGTGAA
  TGTTTCTGTG GCTAAAGGGC TTCCTATGTG CATACACATA GGGTCCCTGG ATAAAATCCC
  CATGTTCCTT TAATTCATGG AGGGTGTGGC TTTGGAAATT ATTCCCCCGT CCCCCACCTA
  CCCCCGCCAT CCGCCATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46954388	NES10819715	PERLEGEN	MM_PANEL2	f	SNP	T	C		C	C		C
ss320771947	CHEV_3_54372752	CHEVERUD	SCREENING_POP	f	SNP			C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30496228					SNP	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954388	NES10819715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54476251 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	1891 bp upstream
Rr576807	regulatory region 576807	1102 bp distal
Rr576808	regulatory region 576808	436 bp distal
Rr576809	regulatory region 576809	1851 bp proximal
Tssr29130	transcription start site region 29130	1067 bp upstream