rs30496226 SNP Detail

Summary

• ID
  rs30496226
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54476226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGTTGG TGGTACTGAC
  ATTAAATACA CTGCCTCTCT CTTTTAGGTA GCAGGCTCCT CTAGAGACAA ACTGCTGTAT
  TTATAAACCT TCAAAATATC TTTCTCTTTT TTTCTAAAAT TTTCTGACAT AAGTTGACCA
  TGCCCTTACT CACCACATGC TCTTGAACAT GTTCTGACAT CTGGAACAAA GTATGCCCAA
  M
  GATGTGGCCT TCCTTTTTCT TTCTTGAGCT AGGACCTCAA AGCAGAGCGC TCAGAATGTA
  CTACTCAACT GAACAGCCTG GTGAATGTTT CTGTGGCTAA AGGGCTTCCT ATGTGCATAC
  ACATAGGGTC CCTGGATAAA ATCCCCATGT TCCTTTAATT CATGGAGGGT GTGGCTTTGG
  AAATTATTCC CCCGTCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954386	NES10819714	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30496226					SNP	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954386	NES10819714	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54476226 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	1916 bp upstream
Rr576807	regulatory region 576807	1077 bp distal
Rr576808	regulatory region 576808	411 bp distal
Rr576809	regulatory region 576809	1876 bp proximal
Tssr29130	transcription start site region 29130	1092 bp upstream