rs30495006 SNP Detail

Summary

• ID
  rs30495006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54496386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTGATG ACTTGCTCTT
  GGACTCTGGA GCCTTCAGAA CCGTAACAAG CTAGGCACAG CAGCCCCCAC CTATGGCTGC
  AGCTGAGGGA GTCTGAGGCA GGAGGGCTGT GAGTTGAAGG CCTTTCTGGG ATACATGGGG
  AGTGTGACTT TGTTTCGATA CACAACAAAA CCAAATCCAA AAAGATCAGT GAGAAGTAAA
  Y
  CTTTCTTTTC TTCAACTTAA ATCTTATTTT CCTCTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGATTGTG TGAGTGTGTG TGTGTGCGTG TGTGTGTGTC TGAGTGCATG TGTGTGAGTG
  TGTGAGTGTG TGTGAGTGTG TGAGTGTGTG TGTGTGTGTG TGAATGCCAT GTGAAGGCAG
  GTACCTATGG AAGCCAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss46954636	NES10818435	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T		T
ss320772046	CHEV_3_54392887	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs30495006					SNP	C	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954636	NES10818435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54496386 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Gm65163	predicted gene, 65163	1437 bp downstream
Rr367440	regulatory region 367440	1104 bp upstream
Rr576811	regulatory region 576811	1033 bp distal
Rr576812	regulatory region 576812	238 bp distal
Rr576813	regulatory region 576813	1011 bp proximal