rs30494032 SNP Detail

Summary

• ID
  rs30494032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54496001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTCAGC TGCTCTCAGG
  GCTGCTACGT TCAAATCCCA GGCTGCTTCT CTGTGTGTTT TCTACCTCAG ACCACTGAAG
  CATGAAGTCT TTGGCGGTGT GTCAGGTGGT ATGAACAGCC ATGACATGAT GACAATGCCG
  GTTTCCTTCC TAGAGCATCA GGTATGTTCA GATGCCTGAG GGAACCGGTG TGAGATAGGA
  R
  CAGCAATGAT AAATGGTGCT GTGTGGTATT TGCAAGCCTG TGGTTTAAGT GCCCCCAGAA
  CTTTGCTCTC CTGGGTGGAA CTGGTACCCT TATTGATTGA AGAGATTGCT TCTCCATTCC
  ACCATGTAAG GGTGCATCGA CAAAGCACTA TTATAAAGCA GAGTGAGCCC CCACCACAGT
  CTAGTTTGGT GATGACTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954632	NES10818521	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30494032					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954632	NES10818521	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54496001 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Gm65163	predicted gene, 65163	1822 bp downstream
Rr367440	regulatory region 367440	1489 bp upstream
Rr576811	regulatory region 576811	648 bp distal
Rr576812	regulatory region 576812	within coordinates
Rr576813	regulatory region 576813	1396 bp proximal