rs30494030 SNP Detail

Summary

• ID
  rs30494030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTAATA AGTCCACCAT
  GCAAATGAGT TTAAATGCTT CCCCGATGTG ACACAGCTGG CAGTCAGCTG CTCTCAGGGC
  TGCTACGTTC AAATCCCAGG CTGCTTCTCT GTGTGTTTTC TACCTCAGAC CACTGAAGCA
  TGAAGTCTTT GGCGGTGTGT CAGGTGGTAT GAACAGCCAT GACATGATGA CAATGCCGGT
  Y
  TCCTTCCTAG AGCATCAGGT ATGTTCAGAT GCCTGAGGGA ACCGGTGTGA GATAGGAACA
  GCAATGATAA ATGGTGCTGT GTGGTATTTG CAAGCCTGTG GTTTAAGTGC CCCCAGAACT
  TTGCTCTCCT GGGTGGAACT GGTACCCTTA TTGATTGAAG AGATTGCTTC TCCATTCCAC
  CATGTAAGGG TGCATCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46954630	NES10818519	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	T	C		C	C	C	C
ss320772038	CHEV_3_54392444	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30494030					SNP	T	T	C	C	T	C	T	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954630	NES10818519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495943 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Gm65163	predicted gene, 65163	1880 bp downstream
Rr367440	regulatory region 367440	1547 bp upstream
Rr576811	regulatory region 576811	590 bp distal
Rr576812	regulatory region 576812	within coordinates
Rr576813	regulatory region 576813	1454 bp proximal