rs30494026 SNP Detail

Summary

• ID
  rs30494026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTTTCT GTTAGTAGTA
  GAAAAATCCT TAAGAACCAG ACTCTTGTCT TAGGAATAAT GATAAATAAC AACAACAACA
  ACAAAAAAAA GCTAGAGTTG CTGTAGTATA AATATGTTTT TCATCTTTTT TGAAATGACA
  GCCCTGTGAC AGACTTGTAA CTAATAAGTC CACCATGCAA ATGAGTTTAA ATGCTTCCCC
  R
  ATGTGACACA GCTGGCAGTC AGCTGCTCTC AGGGCTGCTA CGTTCAAATC CCAGGCTGCT
  TCTCTGTGTG TTTTCTACCT CAGACCACTG AAGCATGAAG TCTTTGGCGG TGTGTCAGGT
  GGTATGAACA GCCATGACAT GATGACAATG CCGGTTTCCT TCCTAGAGCA TCAGGTATGT
  TCAGATGCCT GAGGGAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46954626	NES10818516	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30494026					SNP	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954626	NES10818516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495787 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr367440	regulatory region 367440	1703 bp upstream
Rr576811	regulatory region 576811	434 bp distal
Rr576812	regulatory region 576812	within coordinates
Rr576813	regulatory region 576813	1610 bp proximal