rs30482463 SNP Detail

Summary

• ID
  rs30482463
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148399767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTCAAG ATGTGGAAGC
  AGAAGGATCA AGAGTTTCAG CCTAGCCTCA GCTATATAGT GATTCTCAGG CCAGTCTAGG
  CTACAAGCAG CCTCATATAA AAAAAAATAA CATTTAAAAT ATTCAAAATA AACAGGTAAT
  ATTATGTGTT GGCATCATTG CAACACCAGC GATGAGTGGG TGACTAAAAT AATAATAGTA
  M
  GCATGTGAAA AAATATGCAA AATATTATTT ATAATAAATG GGTTTTTATA GCATAAAAGA
  CATACATTTT GTTCTCCTTC CTATGCAAAT AGAATACCAT CAACTACTAA CTACTTTTCT
  TCCTAGATCA TTTTTTTTTA ATTCTACATG TTGGTACCAG ACAAGGAAGT GAGTAAGTTA
  CATGTAATTA TGGACAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47452953	NES10333729	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30482463					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47452953	NES10333729	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148399767 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	1396 bp upstream
Rr587206	regulatory region 587206	1215 bp proximal
Rr587207	regulatory region 587207	1235 bp proximal
Rr587208	regulatory region 587208	1526 bp proximal
Rr587209	regulatory region 587209	1796 bp proximal