rs30482460 SNP Detail

Summary

• ID
  rs30482460
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148400230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATTGAGT GATATGCTTC
  AGGAAATCCA GAGGGGGGAA AAAGTAGATA GCAGCCATTC CTGATTTCTG TTGTAAAGAC
  TTGGCAGCAG TTAAAAGAGT TGGATGCCAG GCGATGCTGT GTCCTGCATG GGCTCTACTG
  CCTTCTTCAC ATCCGTCATC AAGATGCTGG TGGGCAATGA GCTAGAGCCA GTACAAGCAA
  K
  AACAAATTCT GGTCTTGCAC GAGTTAGCTT TCTTTGGTTG TAAATATTGA GATTCTGATT
  AGCCTACAAC AAACAATTCA CAAGACCTAT CTTGCAGAAT TCAAAAAGGA AATGAAGCAG
  TGTCCTCACC TCAGAGAGAG CTTAGCATCG GATGAGGGAC TGCTAGACAG CATTGGGTAC
  CATGGCCACA GAATTGCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47452950	NES10333730	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30482460					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47452950	NES10333730	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148400230 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	933 bp upstream
Rr587206	regulatory region 587206	752 bp proximal
Rr587207	regulatory region 587207	772 bp proximal
Rr587208	regulatory region 587208	1063 bp proximal
Rr587209	regulatory region 587209	1333 bp proximal
Rr587210	regulatory region 587210	1972 bp proximal