rs30482457 SNP Detail

Summary

• ID
  rs30482457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148400402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAATGAGC TAGAGCCAGT
  ACAAGCAAGA ACAAATTCTG GTCTTGCACG AGTTAGCTTT CTTTGGTTGT AAATATTGAG
  ATTCTGATTA GCCTACAACA AACAATTCAC AAGACCTATC TTGCAGAATT CAAAAAGGAA
  ATGAAGCAGT GTCCTCACCT CAGAGAGAGC TTAGCATCGG ATGAGGGACT GCTAGACAGC
  R
  TTGGGTACCA TGGCCACAGA ATTGCTTGGC CCATCTTTTC AAGATACCTA ACAGGATAGT
  AGGACCTCAA ATGCCTCCTT CATGGTTGCA AAACTTGGCT CTATATAAGG GTTCTCCAAA
  GAGAGAAATA ATCCCCTGCC CCCAGAAAAC CATCTGTTCT TTAATGAAGG AAGTCCAGCA
  GCCTTGTTTT ATGGCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47452947	NES10333731	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30482457					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47452947	NES10333731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148400402 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	761 bp upstream
Rr587206	regulatory region 587206	580 bp proximal
Rr587207	regulatory region 587207	600 bp proximal
Rr587208	regulatory region 587208	891 bp proximal
Rr587209	regulatory region 587209	1161 bp proximal
Rr587210	regulatory region 587210	1800 bp proximal