rs30482454 SNP Detail

Summary

• ID
  rs30482454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148400585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACTGCT AGACAGCATT
  GGGTACCATG GCCACAGAAT TGCTTGGCCC ATCTTTTCAA GATACCTAAC AGGATAGTAG
  GACCTCAAAT GCCTCCTTCA TGGTTGCAAA ACTTGGCTCT ATATAAGGGT TCTCCAAAGA
  GAGAAATAAT CCCCTGCCCC CAGAAAACCA TCTGTTCTTT AATGAAGGAA GTCCAGCAGC
  Y
  TTGTTTTATG GCCCACCAAG ACTCCTCAGA GAATAGAGAA GTCAGTGCTC AGAAAAGTCA
  GGACTCTCTT AAAGGGGCCT CTGGGAAGTT GAGAAACCAA AGAATGAGCT GGTATAATAG
  GAGCCACTGT GGGGTTGCAA TTTTGCTCTT TAAGGCTATG TTAAAGGACT TAAGCCTATT
  TTCCTGAGTA AGGAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47452944	NES10333732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30482454					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47452944	NES10333732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148400585 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	578 bp upstream
Rr587206	regulatory region 587206	397 bp proximal
Rr587207	regulatory region 587207	417 bp proximal
Rr587208	regulatory region 587208	708 bp proximal
Rr587209	regulatory region 587209	978 bp proximal
Rr587210	regulatory region 587210	1617 bp proximal