rs30481621 SNP Detail

Summary

• ID
  rs30481621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148402312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGCTA CCATTTTCCC
  TACAATCATA GGGGGAAAAG ATGTATGACA CAAACTCTGT CATCAAAAGC AGTGGTGAGC
  CAGCCTTCCT CGAGTGCTTC CAAGGATTTT CTTGCAAGCC CCTGAGAGCC ATTCTTCCCT
  TGAGGTCCTT CCTCGGATTG TCTGATGGCT TTTGGAGGAA AGGCAAAAAG TTTGCCCTTG
  W
  CTACTCATGC CAGTGAGGAC CTCAGTTAAG CTCACACATG CACACTTGTT GACACCTGTC
  TGACAGCTGC CATCCTGTCC GCAACAACTG TGCCGCACCC TGAGCACAGC TTCCTGCTAA
  GTCAGCTGTG CGTAACGAAG GAGAAATGTG TGCATACAGC CATGGATGCA AGGGTTTTTT
  TTAAGCTTTT TTTAAAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47452941	NES10333722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30481621					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47452941	NES10333722	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148402312 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	849 bp downstream
Rr587206	regulatory region 587206	746 bp distal
Rr587207	regulatory region 587207	1289 bp distal
Rr587208	regulatory region 587208	998 bp distal
Rr587209	regulatory region 587209	728 bp distal
Rr587210	regulatory region 587210	within coordinates