rs30476960 SNP Detail

Summary

• ID
  rs30476960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54265920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGACTAG AGAAAGCTAG
  TGGAGACACA GATCGGGTGC GGAGGTAGTG AGAAGCACTT TTCCTAAGAA GGTGCAGGGT
  TGACTCCAAG GCTTGGCTGG GTTATAAGAG TTACATGTAT TATTTATTCT ATATGTAAGC
  AACTTTTGAG CTCATGTGCC ATGGCAACCT ATGGACCGCA TGTTAATATA GAAGCATTTT
  W
  AAATTAGTGA TACAATCAAG ACCAAGGGCA TCCTGCTTAT GGTTTGTGTG CACAGGCTTA
  CAGAGTGCAG AGTCCGCGAG GAGTCCCAGG GACTGCTGGA GTTTGAGGTT GGTTTCACAG
  TGGTGAGTAA GCGTGGCAGT GTAATGACCT CATGGTCTCC CGAGGCCAGA TAACAGAGAA
  CTGCCTATAA ATCAGCATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46952221	NES10831836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30476960					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952221	NES10831836	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54265920 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	1163 bp downstream
Gm54174	predicted gene, 54174	1049 bp downstream
Rr576780	regulatory region 576780	535 bp distal
Rr576781	regulatory region 576781	within coordinates