rs30476039 SNP Detail

Summary

• ID
  rs30476039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126070726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATTTAA TAAAATAAAA
  CGTGGGGTAC ATAGTCCCTG ACCCATAGTG TACATCCACT GTGAAAGAAT ATGGGCGATG
  AGGAGGGAGA AGGAGAAGAC GAGGAGGGAC AGGGAGAGGA AGAAGAGGAT CGAGAGGAGG
  AGGGAAGTGA CAGGAGAGGG AGAGAGGAGA GAGCATAAAA CTAAAGAAAT GGGTAGATGA
  R
  CTAGTGCAAA ATTATCAGCT TTACCCAAAA GCAAATTGAT GATGGCAACA TATTCATGGA
  AAAGATGTCC CAGTTCAATT TCCACAATTA GTAAAAATAT ACTGCAAAGT TTGTAAGCAA
  TTTATTTACT TTTTATTTTA AGTGTATGGA AGTTTTGCTA GCATGCATGT TTGTGTACCA
  TGTGTGTCCT TGGTGCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46952010	NES10690841	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A	A	A		G	A	A	G		A
ss135827566	ENSMUSSNP5349842	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss320943742	CHEV_3_125979995	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30476039					SNP	G	G	G	A	G	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952010	NES10690841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126070726 () rs orientation: forward

Symbol	Name	Function Class
Gm18916	predicted gene, 18916	953 bp upstream
Rr584628	regulatory region 584628	435 bp distal
Rr584629	regulatory region 584629	1778 bp proximal