rs30475859 SNP Detail

Summary

• ID
  rs30475859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54264844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGTGTT ACCTCACTCA
  GGGTGATGCA AAATTCTTAA AGAATAAACT AAGGTGGACA GTGAGGAAGA CACACAATGT
  CTTTGGCTTC TATGTATAGG CACACACGTG TGTAACAGCA TATGTGTGTG CACACACATA
  GTCATGCTTT CTTTTCATGT GTCAGCCAGT GTAGAAAAAA AAAAAAACGA CTCAGAAAGC
  R
  AAGCAATCTA TTTCCAACCA TTCCCATACC TTTCCCTCTT CATCCAGATT TGAGAGCACA
  CATTAGTCCC TTCTGCATGA GCCTGGGGGA GACTTCTTGG AAGAGACTGC TAATTCCTAC
  TTGGCTGGCA TTCTGAAATT AAGTTGTTTT CTATGAATTT CAATGTATCA GTTTAATCAA
  AATGTGACAG ACATTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46952209	NES10831817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30475859					SNP	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952209	NES10831817	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54264844 () rs orientation: forward

Symbol	Name	Function Class
Gm54174	predicted gene, 54174	within coordinates
Rr576780	regulatory region 576780	140 bp proximal
Rr576781	regulatory region 576781	840 bp proximal