rs30475763 SNP Detail

Summary

• ID
  rs30475763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116112427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCTTCCGAA GGTCCTGAGT TCAAATCCCA GCAACCACAT ACATGGTGGC TCACAACCAT
  CTGTAATTCG ATCTGATGCC CTCTTCTGGT GTATCTGAAG ACAGCTACAG TGTACTTAGA
  TATTAGATAT AATAATAAAT AAATCAAAAA AAAAACCCCA AAAAAACAAA ACCCCTTTTT
  GGCCCCAATA AATGAGTAGT TCAGACAGGT CACTCTTCAG AGAGAACAAA GTTTTGCTCA
  ATAGCAACTG TCAAAAGGGA GATTTGAAGG AGGCTGTGTG AGTGAGTGAG TGAGTGAGTG
  W
  GTGAGTGTGT GTGTGTGTGT GTGTGTGTGT GTTGTGTACC TGTAATTCTA GCTCTCAGGA
  GACTAACACA GGAAGATGGA GAGTTCAAGG TCAATCTACA CTAAATATAC AGCAAGTTCT
  AAGCCAGTCA GGGCCATACA GTGACACTGA TTTAAAAAAA AAGAACAAGA AAACAGAAAA
  GAGATTCTTT CAACAGTATT CTTGACAGAA GATTCCTATC TATTTATATA AACTCAAAAA
  CAAAGACGTA GAACAGTAAA TAGGTGCAAT CAAACAACAG AGAAAAACAA AAGGTTAAAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45933715	mCV24116840	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30475763					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116112427 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	1954 bp upstream
Rr637158	regulatory region 637158	531 bp proximal
Rr637159	regulatory region 637159	658 bp proximal
Rr637160	regulatory region 637160	948 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	1951 bp upstream
Tssr62558	transcription start site region 62558	1573 bp upstream
Tssr62559	transcription start site region 62559	1558 bp upstream