rs30475109 SNP Detail

Summary

• ID
  rs30475109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126069870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTATTT TCCACATAAG
  ATTCTAACCA TGCAGTTTAA TCGTATGCAG TGGTAACACA CTTGACCATA TACCAACCTG
  CAGACAGTGA TGCTGTAGCA GGATAGTTTC CCTGCAGCCT GGTGAAAGAA GGCCATGCTT
  TCTTCTCCTG AGTCATCAGA GGGATGCTTC ATGCTTCCAC AATAGAGCAG AGCACATCAC
  R
  TCTGCATTAC CTCTTACCTG GCACAAGTCC ACCAGAGAAA TCTGTTTGCT ATTCTAAAAT
  AATATGGATA TCTTCCCAGA ATTAATTTCA GAGAACAGAA TTGAGCATAT TCTTAGATTT
  TTAGAGGGTC ATTTTCTTCA GCTTTTTTAT GGCTAGAATT TAAAGATCCT GTTATAAAAA
  GTCTTCAGGG AAAAGCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45441643	mCV23909543	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss46952000	NES10690876	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G		G	A	A		G	A	A	G		A
ss135827554	ENSMUSSNP295443	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320943740	CHEV_3_125979139	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30475109					SNP	G	G	A	G	A	G	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952000	NES10690876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126069870 () rs orientation: forward

Symbol	Name	Function Class
Gm18916	predicted gene, 18916	1809 bp upstream
Rr584628	regulatory region 584628	within coordinates