rs30475107 SNP Detail

Summary

• ID
  rs30475107
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126069837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAATAC TATAACGGTG
  ATTTATTTCA CTTTGTTTTA TTTTCCACAT AAGATTCTAA CCATGCAGTT TAATCGTATG
  CAGTGGTAAC ACACTTGACC ATATACCAAC CTGCAGACAG TGATGCTGTA GCAGGATAGT
  TTCCCTGCAG CCTGGTGAAA GAAGGCCATG CTTTCTTCTC CTGAGTCATC AGAGGGATGC
  K
  TCATGCTTCC ACAATAGAGC AGAGCACATC ACATCTGCAT TACCTCTTAC CTGGCACAAG
  TCCACCAGAG AAATCTGTTT GCTATTCTAA AATAATATGG ATATCTTCCC AGAATTAATT
  TCAGAGAACA GAATTGAGCA TATTCTTAGA TTTTTAGAGG GTCATTTTCT TCAGCTTTTT
  TATGGCTAGA ATTTAAAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46951998	NES10690873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30475107					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46951998	NES10690873	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126069837 () rs orientation: forward

Symbol	Name	Function Class
Gm18916	predicted gene, 18916	1842 bp upstream
Rr584628	regulatory region 584628	within coordinates