rs30474290 SNP Detail

Summary

• ID
  rs30474290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148572233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCGATGT TTAAGTTCCA TAAGTGGGCC CAGATGCTCT
  TCTCTTAAGC TTTGTAAAAG CAAGAACTAT TTCTTTTTTA ACTTGATTTG ATTACAGCCC
  R
  GTGGAATGGG ATGTTTGCAG GGGTTTCCTT ACACTTCTCG GTAGTCTACA CACTAAGAGT
  GCAAAGCAAG CAGAACCGGG GCACTATTAT AAAATTTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45543123	mCV23528990	ABI	CRAMUS_MOUSE	f	SNP	A	G					A	G
ss47451192	NES10331708	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G		G	G		A	G	G	A		A
ss136064576	ENSMUSSNP7321	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321016696	CHEV_3_148529561	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30474290					SNP	A	G	A	G	A	G	A	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451192	NES10331708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148572233 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	837 bp downstream
Rr587218	regulatory region 587218	1089 bp proximal