rs30474287 SNP Detail

Summary

• ID
  rs30474287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148572315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATTTGAT TACAGCCCAG TGGAATGGGA TGTTTGCAGG
  GGTTTCCTTA CACTTCTCGG TAGTCTACAC ACTAAGAGTG CAAAGCAAGC AGAACCGGGG
  Y
  ACTATTATAA AATTTATCCA ACAATTTGAA TAGCAAATAC TCTACGGTGC ATAAAATAGC
  CGAAGTATAA AACAGCACTG TAAAGCAGTC TGAGAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45486641	mCV23528983	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		T
ss47451189	NES10331709	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	T	C	T		T	T	T	T		C
ss136064579	ENSMUSSNP1435927	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321016697	CHEV_3_148529643	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30474287					SNP	C	T	C	T	C	T	C	C	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451189	NES10331709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148572315 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	919 bp downstream
Rr587218	regulatory region 587218	1007 bp proximal