rs30474179 SNP Detail

Summary

• ID
  rs30474179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126068831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTAGTC GGCCATCACT
  GGAAAGAGAG GCCCATTGGA CAGGCTGGTG TTTTTGCTTT TAAAAACTCC TTGCTCGAAA
  TGCTTATGCT TTAGTTCAGT CACAAATATC TGAGTGTAAT CCCAGCCAGC TAGAATAAAG
  ACTCTCTCTT GATTGTAAAC TGTGTCTGCA TGGTCTTCTC TGGTGGGCTC CCTATAACAC
  R
  ATCCTCCTTT TCCAGGAATG CTGTTTACTC CTCAAAGCTA CAGTTAACAG TCTTGAATGT
  ATTTATATTT TCCTTCTACA GACAGTCTTG TTATCATTGA GTGCTATAGG TTTTTTTTTC
  CTTTTCCTTT GAATATTTTA AAGTGTTTGC CACACATCTT CATCCCTGGA GTCATTCATT
  GAGGACATAT CAGGAATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45455231	mCV23909561	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss46951990	NES10690916	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	A	A		G	A	A	G		A
ss135827536	ENSMUSSNP3587254	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss320943736	CHEV_3_125978100	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30474179					SNP	G	G	A	G	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46951990	NES10690916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126068831 () rs orientation: forward

Symbol	Name	Function Class
Rr584628	regulatory region 584628	943 bp proximal