rs30473690 SNP Detail

Summary

• ID
  rs30473690
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119549521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACCCTTCT TCAAAGACCT GGAGGGAGGC CAATGAGTCT
  GTGCTTCAGT CACATAGGAG GGTGTGGTGC CAAGCCAGTC CCAGTGTTAA TAGCAGAGGG
  M
  AGGACAGTAG CACGTGAGAA CCATCTGGAC TGACTTCATC TCTCCTGAGA AAGAAATTGA
  GCCAACACAT TCTTCCCAGG AGGCCAAACG GATGGGACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45933803	mCV22568827	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss133591160	ENSMUSSNP4763813	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321928757	CHEV_6_119522578	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30473690					SNP	A	A	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119549521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			within coordinates