rs30471918 SNP Detail

Summary

• ID
  rs30471918
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAAAATA GTATGATGTA GGACCAGGGA AATGGCTCCA
  TGGGTAAAGG CACTTGCACC CAAGCCTGAG ATCTGAATTT TGAACCCAGG AATCCACATG
  M
  TGGAAGGAGA GAAATGATCC TTATGAGTTG TTCTTTGAAA TCCATATGTG CTCCCTGACA
  CATAATCCTC CCATCCACAT ACACACAGGA GGCAAAACC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46409740	mCV23074497	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss136828265	ENSMUSSNP3197871	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A		A
ss323100053	CHEV_9_95309193	CHEVERUD	SCREENING_POP	f	SNP					A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30471918					SNP	C	A	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290827 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1504 bp upstream
Gm8449	predicted gene 8449	1895 bp downstream
Gm35915	predicted gene, 35915	220 bp downstream
Gm37805	predicted gene, 37805	206 bp downstream
Rr684790	regulatory region 684790	1409 bp distal
Rr684791	regulatory region 684791	490 bp distal
Tssr86547	transcription start site region 86547	1335 bp downstream
Tssr90904	transcription start site region 90904	1655 bp upstream
Tssr90905	transcription start site region 90905	1583 bp upstream
Tssr90906	transcription start site region 90906	1562 bp upstream
Tssr90907	transcription start site region 90907	1535 bp upstream
Tssr90908	transcription start site region 90908	1498 bp upstream
Tssr90909	transcription start site region 90909	1475 bp upstream
Tssr90910	transcription start site region 90910	1441 bp upstream
Tssr90911	transcription start site region 90911	1413 bp upstream
Tssr90912	transcription start site region 90912	995 bp upstream