rs30471771 SNP Detail

Summary

• ID
  rs30471771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148573019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAACACAT ATAGAAGAAT AATTCTGATG TTTCATTTTT
  TGTTCTTTCC TGGTAGAGCC CTGAGGAATC TCCAGGCTTC CTATGCCTAA CTTGATCTTC
  Y
  AGGACTCCTC AGCCCTACGC TGGTCCCCAC CGATGACGCA GGGCCTTAGG TGCCCTCTCT
  TGTACTTAGG CATTCCTACA GGGATTCTCC CTATACTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45494031	mCV23528696	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss47451162	NES10331718	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	C	T	C		C	C	T		T
ss136064600	ENSMUSSNP5529024	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321016702	CHEV_3_148530347	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30471771					SNP	T	T	T	T	T	T	T	C	C	T	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451162	NES10331718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148573019 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	1623 bp downstream
Rr587218	regulatory region 587218	303 bp proximal