rs30471765 SNP Detail

Summary

• ID
  rs30471765
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148573088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGACATCT CAATGGGTTA
  ATATCTAGTG TTTTAACACA TATAGAAGAA TAATTCTGAT GTTTCATTTT TTGTTCTTTC
  CTGGTAGAGC CCTGAGGAAT CTCCAGGCTT CCTATGCCTA ACTTGATCTT CTAGGACTCC
  TCAGCCCTAC GCTGGTCCCC ACCGATGACG CAGGGCCTTA GGTGCCCTCT CTTGTACTTA
  S
  GCATTCCTAC AGGGATTCTC CCTATACTTC ATGCTCTATT TCTCAAAAAG CATGAAATGT
  AAGCTCCTAC ACGTTAAATA TCTCTTTCAT ATTCACCCAC TGTATATATT TTATAATCGC
  TCACACATAT TCTATTATTT TCCAAGAGGA AGACTCATTA AAATAACAAT TCAATGACTG
  AGTGAGCTTC TCATGGAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47451156	NES10331720	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30471765					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451156	NES10331720	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148573088 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	1692 bp downstream
Rr587218	regulatory region 587218	234 bp proximal