rs30471631 SNP Detail

Summary

• ID
  rs30471631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148600982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTGTGT ACAGCCTAAT
  GGTCAAGCAG TGGTAGAGCA TCAGTGTTGC TCAGAAGCCA GGAGCCCTGA AGGCTGTCAT
  CACACTCTCC TGATGCAGGC AGGAGGCAGG GGAGAAAGCG CAGCTGAGGC TTTCCCAGGT
  AAGCCTTGGA GGTTCCTTCC CGCCAAGTCC TTTCCTGTCT CTCTCCTGTC TTGCTGCTCT
  Y
  CCTGGTTGGT GAAGCGGGCA TGGAAAAGAT ACAGCTCCTG CGGTGTCCAG GACTTGCCTA
  CCACACATTT CAGAATGCAT GTCCACAACG TCCTGGAGAC TGAGACCACA ATCCAGGAGA
  GCTAGGGAGC TGGGAGGCAC TCCCTCCGAC CCTTTTCAGG ACAACAGTGT TGGGCTGCAG
  CCTCCAGCCT CAACTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47450811	NES10331214	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	T	T	T	C	T	C	C	T
ss136065043	ENSMUSSNP1414216	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30471631					SNP	T	T	C	T	C	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450811	NES10331214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148600982 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	157 bp proximal
Rr587223	regulatory region 587223	977 bp proximal