rs30471628 SNP Detail

Summary

• ID
  rs30471628
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148601077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTCCTG GTTGGTGAAG CGGGCATGGA AAAGATACAG
  CTCCTGCGGT GTCCAGGACT TGCCTACCAC ACATTTCAGA ATGCATGTCC ACAACGTCCT
  S
  GAGACTGAGA CCACAATCCA GGAGAGCTAG GGAGCTGGGA GGCACTCCCT CCGACCCTTT
  TCAGGACAAC AGTGTTGGGC TGCAGCCTCC AGCCTCAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47450808	NES10331215	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	G	C	C	C	G	G	C	C	C	G
ss136065046	ENSMUSSNP3888873	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30471628					SNP	G	C	G	C	G	C	C	C	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450808	NES10331215	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148601077 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	62 bp proximal
Rr587223	regulatory region 587223	882 bp proximal