rs30471416 SNP Detail

Summary

• ID
  rs30471416
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148589975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTGAA TAAATTTTAA
  AAAATAAATC AATTAAAAAT TGCAGTCAAA GAAGTAATTC CAAGTCGTTG TCTATAGACA
  AACTCATCCA AGTGCTGGAG AATTGGTGAA ACACACCACC AGGACCATGG AAAGCAACCT
  CAATCTATTC TGCAGAGTCA ATTCTGCTGA GTCAATAGAC CCCAAGTTGC TTCTTCTCCG
  M
  ATCAGAACTC CATCCTAATG GACCAATGGC TGATAAACCT GACACCACAG ATAGATAAAA
  GCTCTCGGGA TCCACACACA TGGGATGAAC GCACTTTCTC AGAAGCTGCC TGCTTGGATC
  CTGTGGGAAA GCTTGAGTGT ACTGAGCAGC CCCGGCTAGC AAGCACTTAC AGCAAATCCC
  CAGTCTCACA AAACATCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47451078	NES10331487	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30471416					SNP	C	A	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451078	NES10331487	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148589975 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13929	CpG island 13929	1247 bp distal
Rr587220	regulatory region 587220	1828 bp proximal