rs30471232 SNP Detail

Summary

• ID
  rs30471232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148592546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGTTT CAGCTGCTAT
  ATTTAGAATG ATTTCCTTAT TTATGCCAAT GCCCCATATA TACTTCATTT GAAGATCTGA
  TAATGGGCCA ACAGCATGTA TTCCCAGAAT GCAATGTTTT TTTTTTCAAA TACTGTAGCA
  ACTAGACATG GAGCCCTTCT GCATTCCGAC TCAAGGGCAG GCTGTGTGCT TTTTACATCT
  M
  GACTGGAGTT CACCTGTAGG ACACCAAGTT TGACACTTGT ACTAAACACC TGCTGTGCAC
  CTAAGTAAGT GTGTGCATGT CTTGCACTAG CCAGCCCGAG CCCTGAAAGC CAGACCTGCC
  AGACAGTCTC TTCGCACTGA CTCCCTCCCA CCATCTTTGC TGTTTCAAAG GTCTACTGAA
  AACAGCTAAC GATCCACACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47451015	NES10331452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30471232					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451015	NES10331452	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148592546 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	359 bp distal
Rr587221	regulatory region 587221	958 bp proximal