rs30471229 SNP Detail

Summary

• ID
  rs30471229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148592680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCAACTA GACATGGAGC
  CCTTCTGCAT TCCGACTCAA GGGCAGGCTG TGTGCTTTTT ACATCTAGAC TGGAGTTCAC
  CTGTAGGACA CCAAGTTTGA CACTTGTACT AAACACCTGC TGTGCACCTA AGTAAGTGTG
  TGCATGTCTT GCACTAGCCA GCCCGAGCCC TGAAAGCCAG ACCTGCCAGA CAGTCTCTTC
  R
  CACTGACTCC CTCCCACCAT CTTTGCTGTT TCAAAGGTCT ACTGAAAACA GCTAACGATC
  CACACTAAGT TCTTCACTCT CTGCTCCTCC CTGGCTGGCT TCCAGAGTCT GCCCTTCATG
  ACCCAAGTGG ACCAGTGTGA GGAAAGGAGA ATTGGTTAGT TATTAATGTA TCCTGATAGA
  TCAAAGGCAC AGACAGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45533118	mCV23527960	ABI	CRAMUS_MOUSE	f	SNP		A					G	G
ss47451012	NES10331453	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	G	G	A	G	A	A	G
ss136064849	ENSMUSSNP5019235	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30471229					SNP	G	A	G	A	G	A	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451012	NES10331453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148592680 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	493 bp distal
Rr587221	regulatory region 587221	824 bp proximal