rs30470729 SNP Detail

Summary

• ID
  rs30470729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148601391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTAGGA GGAAACAGCT
  ACCCTAGTGC AGTAAGGGGG GTCGGCGTTT GCGTCACATG AGAGGGTGTG GCTTCCTATG
  GTTTCTGACA GAAGTCAAGC AAATTTTCAC AAGCAAATGC ACACCATTGG CCGCATGGCT
  TTAGTTCCTT TCCACAGCCC CATATGGTCA CTGCAGACAA TTTTACCTCA CCATTATAGG
  Y
  CAGAAACCCC TAAGAAGATG TTTCAAATGT TTAATGGCTA ACAATCCTTC AAAACCCCTT
  ATTGATGGGA ACTATTAAGG TCACTGGTTT ACGGAGGAAG ACAGCGAGGC TAAGTAAGAT
  TTCAGTTCCT CATGCTTTCA CATGCTGTAA GGATGCTCTG ACAGGTCGCT TTCATGACTC
  TCCACATCAT GACAGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47450799	NES10331219	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T	T	C	T
ss136065061	ENSMUSSNP1408739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30470729					SNP	T	T	C	T	C	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450799	NES10331219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148601391 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	within coordinates
Rr587223	regulatory region 587223	568 bp proximal