rs30470698 SNP Detail

Summary

• ID
  rs30470698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172526462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC GGAGATGTGA ACATGTGGGA
  Y
  TTTGTGCTAT CTCCAGAACA GATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44932235	mCV24591837	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146199181	ENSMUSSNP5391182	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320126983	CHEV_1_174629026	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30470698					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172526462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			334 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			182 bp proximal
Rr423653	regulatory region 423653			1123 bp distal
Rr423654	regulatory region 423654			830 bp distal
Tssr10246	transcription start site region 10246			832 bp downstream
Tssr10247	transcription start site region 10247			94 bp upstream
Tssr10248	transcription start site region 10248			160 bp upstream
Tssr10249	transcription start site region 10249			184 bp upstream
Tssr10250	transcription start site region 10250			239 bp upstream
Tssr10251	transcription start site region 10251			295 bp upstream
Tssr10252	transcription start site region 10252			361 bp upstream
Tssr10253	transcription start site region 10253			410 bp upstream
Tssr10254	transcription start site region 10254			475 bp upstream