rs30470657 SNP Detail

Summary

• ID
  rs30470657
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54267746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAATGT GTGCATTCAC
  AGAGACTGAT GGCTGTTTCC ATTCCTTGCC AACTGAAGCT TCGTATCTTC GCAGCTTCTT
  CATCGAAAGG TTTCTCTGCA TCTCATATCT GGTCATGTGT GAAGACCTAA AAAACAAACA
  AAAAACAAAA AAACAAAAAA ACAAAGTGTC TTCCCTCAGC TAAGAATGCT GAGGTTCAAC
  W
  CCAAGAGAGT ACAGTTGTTC TTACAGAAAG CAGAAGGATA CTCTTGGCAG CAACCCTGTT
  TCTTAATATG CATTTAATTG CCACATTATT TCTGGATTAG TAATACTTGT TTCCAGGGCT
  TATCAGAGTA TGCAGTGTGT GTGTAATGGA AAACAAAAAA AAGTAAAATT GTGAGAAAGA
  TAGATAGATA GATAGATAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46952247	NES10831863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30470657					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952247	NES10831863	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54267746 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	within coordinates
Postn	periostin, osteoblast specific factor	Intron
Rr576781	regulatory region 576781	1149 bp distal
Rr576782	regulatory region 576782	575 bp proximal
Tssr29127	transcription start site region 29127	778 bp upstream