rs30470513 SNP Detail

Summary

• ID
  rs30470513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148590038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTTGTCT ATAGACAAAC
  TCATCCAAGT GCTGGAGAAT TGGTGAAACA CACCACCAGG ACCATGGAAA GCAACCTCAA
  TCTATTCTGC AGAGTCAATT CTGCTGAGTC AATAGACCCC AAGTTGCTTC TTCTCCGCAT
  CAGAACTCCA TCCTAATGGA CCAATGGCTG ATAAACCTGA CACCACAGAT AGATAAAAGC
  W
  CTCGGGATCC ACACACATGG GATGAACGCA CTTTCTCAGA AGCTGCCTGC TTGGATCCTG
  TGGGAAAGCT TGAGTGTACT GAGCAGCCCC GGCTAGCAAG CACTTACAGC AAATCCCCAG
  TCTCACAAAA CATCACCTCA GATGAAAACC CAGACTCGCT ATATTTATTG CTCTGAAAAG
  GCGATTAGCA TGGAAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47451075	NES10331488	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30470513					SNP	T	A	T	A	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451075	NES10331488	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148590038 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13929	CpG island 13929	1310 bp distal
Rr587220	regulatory region 587220	1765 bp proximal