rs30470307 SNP Detail

Summary

• ID
  rs30470307
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148593069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACAGCT CCCCACACTT
  GAAACGCCAT GTGCAAAATG TTCTCTGTGT GTATGGTCTC TCATCTGAAA GCATGATGTT
  TCTAATGTTT TATGGATATG AAAGGCCTGC ATATTATATG TAGTATATTA CTGGGTAGAT
  AGGACAGAGG GAGAGACATG GTGTTCATTG TTTCACATGC ATCTTAGACA CAGACAGGAG
  K
  TAAGGCCAGT GCTTTCAGTA GAGCCACACT TTGCACACTT CTGTCAAAAA GCCATTTTTG
  GTATCATTTT CTGTTGCGCT ACCATGTTGG TACAATGTTA TGATCTAGAT TTTCTGTTAT
  GGATGCTCAA CTTGAAGAAC CCACATTACC AATTGAAGGG GAATACTCAA CAGTAGCTCT
  GTTGACAGGC AGACTTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45520070	mCV23527959	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss47451000	NES10331457	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30470307					SNP	T	T	G	T	G	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451000	NES10331457	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148593069 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	882 bp distal
Rr587221	regulatory region 587221	435 bp proximal