rs30469913 SNP Detail

Summary

• ID
  rs30469913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172317388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC TTACCTCTGC CCTCCCTCAC
  R
  CCCTCAGTTC TTCAGATAAA ATCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44931271	mCV23003468	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss120011503	PARCsnp_1.19830	PARC_SEQ	INBRED	f	SNP		A	G
ss120014502	PARCsnp_1.09871	PARC_SEQ	INBRED	f	SNP		A	G
ss146193578	ENSMUSSNP1045587	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320125695	CHEV_1_174419952	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30469913					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172317388 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			692 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			685 bp distal
Rr423588	regulatory region 423588			113 bp distal
Rr423589	regulatory region 423589			746 bp proximal
Rr423590	regulatory region 423590			925 bp proximal