rs30469665 SNP Detail

Summary

• ID
  rs30469665
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54266854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTTT TTTTTTTTTT
  TTTTTTTGAA GACCTCCCTG ATGTCATTAC TGATCCTAAT TGGTAAATAT TTTCGAAGGG
  TTGGCATTTG TTGACTTGAT GAGAGTTTGG TAAGTCTCAA ACATGATGCT CAGAGTGGAA
  CGATTTCAGA TTTCTATTAT TGGACACTAT AAAAAGGGGG TTTCAGGGTG CCTTTTTGTC
  M
  TACGAGAGTA TGCTTTGCCT TGTGCCAAAC AGTGAATGTG TGCTGCTTGT CAGAATACTG
  CAGTAACCTC ATCAATAAAC ATTCTAACAG CCAGTTGGTT GATATCAGAT AGACCTTATG
  TGCATGAGAT ACGGCTGCCT TTTCATTGAG CAGTTACGGA CAGCCCACCA TTTGTACAAA
  CTAAGAGTAG CAAAAACTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46952235	NES10831852	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30469665					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952235	NES10831852	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54266854 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	229 bp downstream
Gm54174	predicted gene, 54174	1983 bp downstream
Postn	periostin, osteoblast specific factor	Intron
Rr576780	regulatory region 576780	1469 bp distal
Rr576781	regulatory region 576781	257 bp distal
Rr576782	regulatory region 576782	1467 bp proximal
Tssr29127	transcription start site region 29127	1670 bp upstream