rs30469565 SNP Detail

Summary

• ID
  rs30469565
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148591068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTTTTAC CTTCTGTGCC
  AAGTAACTTC TCAAAGGCTC ACAATATTTA AAAGCATGGA AGAAAAGGGA TATCACACTA
  TCAGCTTTGT AAACACATAG GGAAAATTTG CATGCAGCAG TGGACCGAAT GTGCTGTGCA
  CAGGACAGCT GACTCAGCAA ATGTGATGCA TGGCAGTTAA GTAGGATGAA GGCCTCCTCC
  M
  AGCCTTGGTG AACAGCCTGA TGTTCAACCC CTCTTTTAAA AGAGATACTA CAGCCTAACT
  CTACTAGGAC GGAGTGTGCC TGGCTATCAT TCCTCGGGCA ACAGTGTGAG AACAGAGCAG
  TCTTCCTACC TTCAGCCTCA CCTGACATCA CATGTAATGC TGCACCTTAA CAATCAAAGT
  TTCTGGATAA GAGCTAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45445292	mCV23528003	ABI	CRAMUS_MOUSE	f	SNP		A	C				A	A
ss47451057	NES10331438	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	C		A	A	A	C	A	C	A
ss136064825	ENSMUSSNP3741346	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30469565					SNP	A	A	C	A	A	C	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451057	NES10331438	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148591068 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	735 bp proximal