rs30468905 SNP Detail

Summary

• ID
  rs30468905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148602445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCACAACC ATAAGCATCT
  TGGCCAAATG ATATGGTGCT TTGTCAACAA AGAGCACGCT TTGTTGGACT TGAAGCGAGT
  GGGGACAAGC ACTTTGCCTT TCTGCCCTTG GCTCTATTCA GACTTGAACA CAGTGCTGTG
  GGAATCGTGT CTATAAAAGG GGCTCTTATT AACCAGAATA TAAAAGTTTC AAGGTCTCTC
  Y
  CTGGTGCTGC TTTTCTTAAT AACTCTGAAC TAACCCAGAG TCACAGATGC CACTGCTCAT
  GCTGTACTCG GGTCCTAGCA GGAACGGTGA CTTTTCATTA TCAGGGACCT CTGTGGGACC
  GGGGCTGTGA CTTCAAGCTG TCCTGAGACA TTAACTCGGG CCACCATTTA TTAAGAGTGC
  TGGCCTATGA AATCTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47450775	NES10331233	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30468905					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47450775	NES10331233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148602445 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375899	regulatory region 375899	1644 bp upstream
Rr587222	regulatory region 587222	828 bp distal
Rr587223	regulatory region 587223	27 bp distal
Rr587224	regulatory region 587224	1804 bp proximal