rs30468816 SNP Detail

Summary

• ID
  rs30468816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148591564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGGTGAC CGTCTAAGAA
  TCTTCAAGTA TAACTAAATG TTGTTGAGAA AAGAGATGAA TTCAACCTTT TGAAGATGAA
  CTACAAAGAA TCCTTTAAAG ACAACCACAC AGTTTAAATA TTACTCATTG GAAATTTTGA
  AATATTTCTA AGATAAAATC CTAAATGCTC AAGGCATATT GGACTTAGGT GCTTTTTGGA
  Y
  TAGGATATTT AACCAGGAAA ACTGGGGCAA ATATTTCAAA ATCTGATATC TGAGATACTT
  CTTGTACTTC AGATTCTAAG TAAGGGACAC AGAGAAGACG CTACTGCCAG TGACCTACAC
  AGCCTCTGTT CACTCTGCAT GACCAGGTAC ATAGCAAGTA GAGGAACAAT AATCTCACTC
  TAGCCCTTTG GAATGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47451048	NES10331441	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30468816					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451048	NES10331441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148591564 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587220	regulatory region 587220	239 bp proximal
Rr587221	regulatory region 587221	1940 bp proximal