rs30468743 SNP Detail

Summary

• ID
  rs30468743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54266755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCTGT TTCTCAAGCA
  CTCTGATTTC TTCATCTTTA CCTAAAATCT CTACTCTCGT TCTTCTCAAG ATTTATGGGT
  GATCTGTGTG TCTCCGGCTC TTTTTTTTTT TTTTTTTTTT TTTTTTGAAG ACCTCCCTGA
  TGTCATTACT GATCCTAATT GGTAAATATT TTCGAAGGGT TGGCATTTGT TGACTTGATG
  R
  GAGTTTGGTA AGTCTCAAAC ATGATGCTCA GAGTGGAACG ATTTCAGATT TCTATTATTG
  GACACTATAA AAAGGGGGTT TCAGGGTGCC TTTTTGTCAT ACGAGAGTAT GCTTTGCCTT
  GTGCCAAACA GTGAATGTGT GCTGCTTGTC AGAATACTGC AGTAACCTCA TCAATAAACA
  TTCTAACAGC CAGTTGGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46952233	NES10831849	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	G	A	A	G		G	G	G	G		G
ss320771133	CHEV_3_54163256	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30468743					SNP	A	A	G	G	A	G	G	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952233	NES10831849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54266755 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	328 bp downstream
Gm54174	predicted gene, 54174	1884 bp downstream
Postn	periostin, osteoblast specific factor	mRNA-UTR
Rr576780	regulatory region 576780	1370 bp distal
Rr576781	regulatory region 576781	158 bp distal
Rr576782	regulatory region 576782	1566 bp proximal
Tssr29127	transcription start site region 29127	1769 bp upstream