rs30468741 SNP Detail

Summary

• ID
  rs30468741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54266607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTCTC TTCTACAACT
  TCAGCTAGCT TCCCTTCTCA GTTTCAAAAC TGCCTTCCTT TTCTCAGCCG TCCCCAAACT
  GGCTCAGAGC CAGACTTTAG CTTTGGACTT TCTTCCAACA ATTAACATAC AGCATCACTC
  TTCTGACCTG GCCTCTGTTT CTCAAGCACT CTGATTTCTT CATCTTTACC TAAAATCTCT
  R
  CTCTCGTTCT TCTCAAGATT TATGGGTGAT CTGTGTGTCT CCGGCTCTTT TTTTTTTTTT
  TTTTTTTTTT TTTGAAGACC TCCCTGATGT CATTACTGAT CCTAATTGGT AAATATTTTC
  GAAGGGTTGG CATTTGTTGA CTTGATGAGA GTTTGGTAAG TCTCAAACAT GATGCTCAGA
  GTGGAACGAT TTCAGATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46952231	NES10831848	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	G	A	A	G		G	G		G
ss320771131	CHEV_3_54163108	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30468741					SNP	A	A	G	G	A	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952231	NES10831848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54266607 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	476 bp downstream
Gm54174	predicted gene, 54174	1736 bp downstream
Postn	periostin, osteoblast specific factor	1923 bp upstream
Rr576780	regulatory region 576780	1222 bp distal
Rr576781	regulatory region 576781	10 bp distal
Rr576782	regulatory region 576782	1714 bp proximal
Tssr29127	transcription start site region 29127	1917 bp upstream