rs30468735 SNP Detail

Summary

• ID
  rs30468735
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54266081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAACCTA TGGACCGCAT
  GTTAATATAG AAGCATTTTA AAATTAGTGA TACAATCAAG ACCAAGGGCA TCCTGCTTAT
  GGTTTGTGTG CACAGGCTTA CAGAGTGCAG AGTCCGCGAG GAGTCCCAGG GACTGCTGGA
  GTTTGAGGTT GGTTTCACAG TGGTGAGTAA GCGTGGCAGT GTAATGACCT CATGGTCTCC
  S
  GAGGCCAGAT AACAGAGAAC TGCCTATAAA TCAGCATGCC GCGGCTAGAG AGAAACGGCC
  CTGTTTCTCA GACACACTAT CTCTCTTCAG CTACATAATG AACCATTTCT TTCTCAGTAA
  TGACTTACAT CTCTGGGTCA GACTTTGCAG CCCTGGAAAG TCGGACTTCA TTTTCATGAT
  TTCCGTCATC TTCCCGACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46952225	NES10831841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30468735					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952225	NES10831841	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54266081 () rs orientation: forward

Symbol	Name	Function Class
Gm31095	predicted gene, 31095	1002 bp downstream
Gm54174	predicted gene, 54174	1210 bp downstream
Rr576780	regulatory region 576780	696 bp distal
Rr576781	regulatory region 576781	within coordinates