rs30468704 SNP Detail

Summary

• ID
  rs30468704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126071629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGGATA CCTTGGAATA
  GAAAGCTGCT TAATAAGAAA ACTGAGCTGA AATTGCAGTG AGAAGCATGT TTGGGATCTC
  TTTCAAATAA TTGTTAAAGA CGAAAATGAA GTGTTTCCTA CTTACCAGTC TTCTCAAAGA
  GCCATGCATG GGTGTATTCT TGTCCTATTC GCAATAACCT ATAAAGACTC ATGGAACAAA
  Y
  AGCTTTGGAC CAAGCCACCA AGAGAGGGCC AAAGCTCAGG AATTAGCATG GAGGGGGGCG
  TTCTGGACAC CCTGGAGGCG CTGGGGTATA AGAGTCCACT GTTCTAGGAA CAGACAGCAG
  CAGAGGGTGG ACTGTCTTCA CCTGAGTTTT CAGAGCTCTG CATTTGGTTA GGCTCTCAGA
  GAAAGTCCTT ATGCAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46952024	NES10690797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30468704					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46952024	NES10690797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126071629 () rs orientation: forward

Symbol	Name	Function Class
Gm18916	predicted gene, 18916	50 bp upstream
Rr584628	regulatory region 584628	1338 bp distal
Rr584629	regulatory region 584629	875 bp proximal